Hi all,<br><div class="gmail_quote"><div> </div><div>    I want to include a new tool to galaxy. The tool is written in C++. How do I write the xml file to execute a cpp program?  The tool that I am trying to integrate is    <a href="https://code.google.com/p/bedtools/" style="font-size:large" target="_blank">https://code.google.com/p/bedtools/</a></div>

<div><br></div><div>I have the class file to be executed and the command to execute it. For example,</div><div><br></div><div>&#39;IntersectBed&#39; is my class file. The command to execute it is              $<span style="font-size:12px;font-family:Monaco,&#39;DejaVu Sans Mono&#39;,&#39;Bitstream Vera Sans Mono&#39;,&#39;Lucida Console&#39;,monospace">intersectBed -a reads.bed -b genes.bed   (reads.bed and genes.bed are input files provided by the user)</span></div>

<div><br></div><div>How should I write the &lt;command&gt; tag in the xml file so as to execute the above command? Since C++ is complied as opposed to Python which is interpreted, I am not sure how to write the &lt;command&gt; tag.</div>

<div><br></div><div><br></div><div>I am a newbie. I appreciate any guidance offered!</div><div><br></div><div>Thanks,</div><div>VJ.</div>
</div><br>