The documentation here is quite good: https://docs.galaxyproject.org/en/master/admin/conda_faq.html
As an aside, the dockerized version of Galaxy (https://github.com/bgruening/docker-galaxy-stable) from Björn Gruening makes this convenient.
Devon
Hi Devon,
I'm also experiencing similar issues. Could you please briefly explain how to use Condo with Galaxy?
Is there any other versions where Conda is integrated apart from the regular Galaxy distributions?
On Mar 8, 2017 7:38 PM, "Devon Ryan" <dpryan79@gmail.com> wrote:
______________________________Hi Timo,
Use conda for dependency resolution in Galaxy and make your life easier :)
Devon
On 03/08/2017 06:31 PM, Timo Janßen wrote:
Hi all, trying to install the deeptools_suite from the toolshed I only get the following error: "500 Internal Server Error nginx/1.11.10" This happens as well for the dependencies, e.g. deeptools_bigwig_compare. I am currently using Galaxy 16.10 with nginx proxy. Also the installation of the dependency package_python_2_7_matplotlib_1_4 fails because of a missing dependency: "Error installing tool dependency python version 2.7.10: Unable to locate required tool shed repository named package_python_2_7_10 owned by iuc with revision 80931fb5f433." Has anyone seen these problems before and knows a solution? Best regards, Timo Janßen ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject. org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Devon Ryan, PhD Bioinformatician / Data manager Bioinformatics Core Facility Max Planck Institute for Immunobiology and Epigenetics Email: dpryan79@gmail.com_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject. org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Devon Ryan, PhD Bioinformatician / Data manager Bioinformatics Core Facility Max Planck Institute for Immunobiology and Epigenetics Email: dpryan79@gmail.com