Hi Devon, I tried to connect to Galaxy instance with FTP client WinSCP as follows: [image: Inline images 1] But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too. Regards, _________________________________ *Md. Rezaul Karim*, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html <http://139.59.184.114/index.html> On 23 June 2017 at 11:05, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote:
Ok, thanks for the clarification. I will try again and get back to you.
On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan@dpryan.com> wrote:
If your user is an admin then yes. Each user can use their normal login credentials. -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany
On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote:
Did you mean using the admin user email id and the password?
Regards, _________________________________ Md. Rezaul Karim, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html
On 23 June 2017 at 10:44, Devon Ryan <dpryan@dpryan.com> wrote:
You should be able to login with the email address and password that you use for Galaxy then. That works for my instances at least. -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany
On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote:
Hi Devon,
Yes, I'm running the galaxy-docker-stable from Björn and my
RiboGalaxy
is built on top of it (version 17.05). My system admin has provided me with the IP address of this DNS and when I issue the FTP command as follows:
asif@ubuntu:~$ ftp 10.196.106.60 8021
It shows:
Connected to 10.196.106.60. 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] Name (10.196.106.60:asif):
It seems ProFTPD is already configured. While running the container, port 8021 was mapped to 21.
Regards, _________________________________ Md. Rezaul Karim, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html
On 23 June 2017 at 10:30, Devon Ryan <dpryan@dpryan.com> wrote:
Are you using galaxy-docker-stable from Björn (https://github.com/bgruening/docker-galaxy-stable) or did you make your own dockerized-Galaxy version? Björn's runs proFTPd by default, so if you're using it then ensure that's running in the container.
Devon -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany
On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote: > Dear All, > > I have Dockerized the Galaxy and it's running as a containerized > application > on the DC/OS server. It can be accessed at > http://bioopenergalaxy.insight-centre.org/. > > However, I'm wondering how to FTP files on it. Please note that I > have > the > following configuration on the galaxy.ini file: > > # This should point to a directory containing subdirectories
matching
> users' > identifier (defaults to e-mail), where Galaxy will look for files. > ftp_upload_dir = /export/ftp > > # This should be the hostname of your FTP server, which will be > provided > to > users in the help text. > ftp_upload_site = bioopenergalaxy.insight-centre.org > > > Any help or pointer would be highly appreciated. > > > > > Regards, > _________________________________ > Md. Rezaul Karim, BSc, MSc > Researcher, INSIGHT Centre for Data Analytics > National University of Ireland, Galway > IDA Business Park, Dangan, Galway, Ireland > Web: http://www.reza-analytics.eu/index.html > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/
