Hi there all, I have searched previous posts, nothing since 2010. I have a local install (production config - postgres, etc - on CENTOS 6.5). Does anyone have RPY working? I install via toolshed and the folder is empty, and shows missing dependencies.
From Galaxy User: Dataset generation errors Dataset 81: Build base quality distribution on data 9
Tool execution generated the following error message: Traceback (most recent call last): File "/apps/galaxy/galaxy-dist/tools/metag_tools/short_reads_figure_score.py", line 12, in <module> from rpy import * ImportError: No module named rpy I have attempted to download/install the scripts but they fail with multiple errors (most posts out there have a bad URL) - http://getgalaxyp.org/install.html says use: curl http://rpy.svn.sourceforge.net/viewvc/rpy/trunk/rpy/?view=tar > rpy.tar.gz if you view that it redirects you to another URL. Via shell: R is installed: R version 2.13.0 (2011-04-13) Can someone provide me some help please to get it working via Galaxy? I understand it works in Central.
From Toolshed: Name
Version Type Installation status rpy<http://seachildrenslinuxvm.cloudapp.net:8080/admin_toolshed/manage_repository_tool_dependencies?tool_dependency_ids=fb85969571388350> 1.0.3 package Error Toolshed Error: In file included from src/rpymodule2110.c:51: src/RPy.h:56:20: error: Python.h: No such file or directory In file included from /usr/lib64/python2.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:68, from /usr/lib64/python2.6/site-packages/numpy/core/include/numpy/arrayobject.h:14, from src/RPy.h:89, from src/rpymodule2110.c:51: /usr/lib64/python2.6/site-packages/numpy/core/include/numpy/npy_common.h:79:2: error: #error Must use Python with unicode enabled. <truncated> Thanks, Curt CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message.