Hi,

After a big upgrade, I have an error when I submit job to SGE through drmaa

Here is the error I get:

galaxy.jobs.runners.drmaa WARNING 2013-10-14 11:26:08,075 (15615/68154) job check resulted in InvalidJobException: code 18: The job specified by the 'jobid' does not exist.

The job is launch to sge because I see it with "qstat" SGE command. On the galaxy Web interface, the job is stuck in yellow (running state), although it is finished.

When I submit job by using "local" destination it works fine.

Here is my job_conf.xml file :

<?xml version="1.0"?>

<!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->

<job_conf>

    <plugins>

        <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/>

        <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>

    </plugins>

    <handlers>

        <handler id="main"/>

    </handlers>

    <destinations default="sge_default">

        <!--destination id="big_jobs" runner="drmaa">

            <param id="nativeSpecification">-P bignodes -R y -pe threads 8</param>

        </destination-->

        <destination id="sge_default" runner="drmaa">

            <param id="nativeSpecification">-q all.q -V</param>

        </destination>

        <destination id="local" runner="local"/>

    </destinations>

</job_conf>

Any help would be usefull.

Regards,

Rem