Thank you Nicola,

it worked when I put retry_job_output_collection = 10, but only for some tools. For some of them is still the same. Especially if I run it on a data collections.

And if I run the tool locally , not over the Slurm, it worked well.

I am not sure if the problem is with Slurm maybe or some Galaxy-Slurm configuration?

Best,

Marija

Von: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] Im Auftrag von Nicola Soranzo
Gesendet: Montag, 23. Jänner 2017 17:17
An: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org
Betreff: Re: [galaxy-dev] Resource temporarily unavailable

Hi Marija,
you can try to set

retry_job_output_collection = 3

in your config/galaxy.ini file and see if that helps.

Cheers,
Nicola

On 23/01/17 09:47, Durdevic, Marija wrote:

Dear developers,

From time to time I have issue on my Galaxy server. The problem is when job is done and results has to be written to the database something happened. The error message is: “/home/data/galaxy_database/files/024/dataset_24790.dat: Resource temporarily unavailable” where “/home/data/galaxy_database/files/024/dataset_24790.dat” is path to the output file. Although it produced reasonable output the job is shown as failed.

I am running galaxy over Slurm and we use NFS for connection with storage.  

Do anyone have idea what can be possible reason for such error?

Thanks in advance.

Best,

Marija

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