It keeps doing posts, and I'm not seeing any new errors. 

POST http://su2c-dev.ucsc.edu:8383/library_common/library_item_updates

200 OK

121ms

When I did a browser refresh, I got the following javascript error:     (I am logged in)

Galaxy.currUser is undefined on Line 631 in history-panel.js

When I opened the data library where the bam file was copying, everything is rendered ok.  It seems the browser refresh fixed things.

-Robert

On Nov 4, 2013, at 11:14 AM, James Taylor <james@jamestaylor.org> wrote:

Robert, I'm not sure what is going on here, other than that the javascript that converts buttons into dropdown menus has not fired. 

Are there any javascript errors? 

Marten is working on rewriting libraries, and we will be eliminating the progressive loading popupmenus for something much more efficient, but this also might indicate a bug so let us know if there is anything odd in the console. 

--
James Taylor, Associate Professor, Biology/CS, Emory University

On Mon, Nov 4, 2013 at 1:58 PM, Robert Baertsch <baertsch@soe.ucsc.edu> wrote:

HI James,

I just pulled in the latest code to see how you changed from iframe to divs. Very exciting update.

I tried importing a bam file into the library using the admin tool that reads the file directly from a path on the server.

During the copy operation, the screen gets into a weird state. 

ps -ef shows these two processes running:

 python /data/galaxy-central/tools/data_source/upload.py /data/galaxy-central /data/galaxy-central/database/tmp/tmpywxnFE /data/galaxy-central/database/tmp/tmpXkEvSY 8876:/data/galaxy-central/database/job_working_directory/004/4547/dataset_8876_files:/data/galaxy-central/database/files/008/dataset_8876.dat

 samtools sort /data/galaxy-central/database/files/008/dataset_8876.dat /tmp/tmpNbcggh/sorted

Do you finish rendering the screen after the copy operation is complete?

-Robert

<Screen Shot 2013-11-04 at 10.53.02 AM.png>

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