Thanks John, Fingers crossed we'll get some more detailed logs in a day or two :) Peter On Wed, Nov 19, 2014 at 5:48 PM, John Chilton <jmchilton@gmail.com> wrote:
Hey Peter,
Dave is out this week - so I have tried to fumble around and see if I could make some progress on this. I found some bugs in a recent commit and fixed them - that might help (https://bitbucket.org/galaxy/galaxy-central/commits/b81798f94dc0fd14de1d585e...). I also have enabled more verbose logging that might help those "History in error state" exceptions (https://bitbucket.org/galaxy/galaxy-central/commits/a799879a82c54c2d1afec6e3...) but I am not sure it will propagate through to the tool shed API - we will see I guess.
If the install and test framework just picks up the latest central - these fixes will hopefully be reflected in the next run.
-John
On Wed, Nov 19, 2014 at 4:48 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi Dave,
Any progress? All the following seem to have been tested in the last few days on the TestToolShed, but failed with "Exception: History in error state."
https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go https://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr https://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod https://testtoolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired https://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss https://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler https://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus https://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id
That's about half of my TestToolShed repositories - most of the others report their tests passed :)
I am also seeing unexpected problems with packages, e.g.
https://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_29
Error getting revision e78bbab7933d of repository package_blast_plus_2_2_29 owned by iuc: An entry for the repository was not found in the database.
Thanks,
Peter