Hi, I second Marius here, I would not try to fix the miniconda installation, but rather fix the `tar` installation. This is not the original COS6.8 behaviour right? Ciao, Bjoern Am 19.04.2017 um 17:57 schrieb Matthias Bernt:
Dear list,
Just found out that conda is not installing on our CentOS6.8 installation (might be related to earlier messages).
The problem is that the shell script installing conda unsets the LD_LIBRARY_PATH which makes tar dysfunctional (tar is called by the installer).
The command line that is executed during galaxy's installation is
wget -q --recursive -O '/tmp/conda_install7tWo7r.sh' 'https://repo.continuum.io/miniconda/Miniconda3-4.2.12-Linux-x86_64.sh' && bash '/tmp/conda_install7tWo7r.sh' -b -p '/gpfs1/data/galaxy_server/galaxy-dev/_conda' && /gpfs1/data/galaxy_server/galaxy-dev/_conda/bin/conda install -y -q conda=4.2.13
Removing the unset LD_LIBRARY_PATH line (and fiddling around with some file size checks) is (seemingly) successful.
There is an open issue on the conda github: https://github.com/conda/conda/issues/3632
Any suggestions? The line removal procedure seems to be quite complicated in an automated ansible installation which I try to achieve.
Cheers, Matthias
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