Dear Nate,

Yes, you are right, for some reason, we couldn't cd to the folder. It is fixed and I restart the Galaxy. The only thing is that it needs about 10 minutes to start. I remembered it is a little fast last week. Is there any problem? Anyway, Galaxy works.

Thanks,

Yan

On Mon, Feb 14, 2011 at 8:49 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Yan Luo wrote:
> Dear Nate,
>
> Thanks for your quick response, I got "sever error". and just killed the
> process. When I ran activate as follows and can't active it:
>
>
> kangtu@dscbc-compute:~$ .
> /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate
> bash: /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate: Stale NFS
> file handle
> kangtu@dscbc-compute:~$

It looks like the NFS mount on which Galaxy lives has gone bad, possibly
due to an error with the NFS server.  I suggest contacting a local
system administrator for assistance.

--nate

>
>
> Any suggestion will be appreciate.
>
> Best Wishes,
>
> Yan
>
>
>
> On Mon, Feb 14, 2011 at 8:43 AM, Nate Coraor <nate@bx.psu.edu> wrote:
>
> > Yan Luo wrote:
> > > Dear Nate,
> > >
> > > I have a new problem, last week, I restarted the Galaxy, but it worked
> > well.
> > > This morning, I found I can't start it from browser, but when I check "ps
> > > auxwww|grep python", I still find it is running, what is problem?
> >
> > What happens when you try to connect via a browser?  Is an error message
> > displayed?  Connection timeout?
> >
> > >
> > > kangtu   24468  0.3  0.0 961592 104296 pts/30  Sl+  Feb11  13:43 python
> > > ./scripts/paster.py serve universe_wsgi.ini
> >
> > If you reconnect to your screen session and take a look at the output
> > from the Galaxy server, there may be error message displayed which would
> > explain what the problem is.
> >
> > --nate
> >
> > >
> > >
> > > Looking forward to hearing from you.
> > >
> > > Best Wishes,
> > >
> > > yan
> > >
> > > On Fri, Feb 11, 2011 at 11:16 AM, Yan Luo <luomails@gmail.com> wrote:
> > >
> > > > Dear Nate,
> > > >
> > > > I just used "screen", and restarted the galaxy, it works. It is
> > perfect,
> > > > and I also found that some features can't be used before, when I
> > restart it,
> > > > everything is fine.
> > > >
> > > > Have a wonderful weekend!
> > > >
> > > > Best Wishes,
> > > >
> > > > Yan
> > > >
> > > >
> > > >
> >