Unfortunately there is nothing about the tool shed install process that requires the install procedures to result in portable environments. So yeah - if it all possible I would take Will's advice and preserve absolute paths. -John On Wed, Sep 9, 2015 at 7:10 PM, Will Holtz <wholtz@lygos.com> wrote:
Can you move the folder to a new drive, but mount that new drive at the same place within the filesystem?
-Will
On Wed, Sep 9, 2015 at 10:49 AM, Dooley, Damion <Damion.Dooley@bccdc.ca> wrote:
On a VM I moved the tool_dependency_dir folder to another mount since it was getting so large that the smallish main mount was full (and changed galaxy.ini, restarted galaxy, and checked that permissions were appropriate for galaxy user). But I'm finding I have to reinstall various tool dependencies (prokka etc) to enable galaxy to find the command line executables. Is there a trick to getting the tool dependencies working again after moving the folder wholesale?
Thanks,
Damion
Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for Disease Control 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at wholtz@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers).
Please consider the environment before printing this email.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/