Vincent, Thanks, that looks like either a different bug, or the fix hasn't made it to the master branch yet. One possible workaround you could try, while I confirm which is the case, is to set the following option in your tool_shed.ini somewhere after [app:main] use_printdebug = False - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 04/28/2016 09:54 AM, Vincent Cahais wrote:
git show
commit b79474083b08860923f7f28fc1e7442b53f925db Merge: 7c94ac8 5aefe1b Author: Martin Cech <cech.marten@gmail.com> Date: Wed Apr 20 15:22:20 2016 -0400
Merge pull request #2206 from dannon/master
Sanity check of master update.
Le 28/04/2016 15:40, Dave Bouvier a écrit :
Vincent,
Could you provide the output of `git show` in your Galaxy root? This error message looks like a bug that was fixed in 0d616af28a175bae8e193f429a18f97cd8b274ec.
- Dave Bouvier http://galaxyproject.org http://usegalaxy.org
On 04/28/2016 09:26 AM, Vincent Cahais wrote:
Hi everyone,
I'm trying to set up a new local toolshed with a fresh install of galaxy. I can run the server, create repositories and upload files. But when I try to install a tool in galaxy it fail with a server error.
In the tool_shed_webapp.log I have the following error :
---------------------------------------- Exception happened during processing of request from ('**.**.**.**', 41026) Traceback (most recent call last): File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py",
line 1085, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib/python2.7/SocketServer.py", line 331, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib/python2.7/SocketServer.py", line 652, in __init__ self.handle() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py",
line 459, in handle BaseHTTPRequestHandler.handle(self) File "/usr/lib/python2.7/BaseHTTPServer.py", line 340, in handle self.handle_one_request() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py",
line 454, in handle_one_request self.wsgi_execute() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py",
line 304, in wsgi_execute self.wsgi_start_response) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/urlmap.py",
line 216, in __call__ return app(environ, start_response) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/debug/prints.py",
line 107, in __call__ environ, self.app) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/wsgilib.py",
line 547, in intercept_output if data[0] is None: IndexError: list index out of range ---------------------------------------- Removing PID file tool_shed_webapp.pid
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