Hey Greg,

Sorry about the delay on this over the holidays.  I see what you're working with now.  If you install your customizations in a portable manner in /mnt/galaxyData that should be safe and we'll make sure to provide a smooth migration path going forward should that change.  Only 'galaxy' type clusters will have /mnt/galaxy and data only clusters should continue to work just fine with /mnt/galaxyData.

-Dannon


On Mon, Dec 30, 2013 at 1:33 PM, greg <margeemail@gmail.com> wrote:
Just following up on this.  So it's ok to do all of my customizations
in /mnt/galaxyData?

Or am I doing something wrong, and I need to figure out how to boot up
into a version that has /mnt/galaxy?

Thanks again,

Greg

On Fri, Dec 20, 2013 at 2:49 PM, greg <margeemail@gmail.com> wrote:
> Yes, I just launched it a few hours ago.
>
> I just went here and filled out the form:
> https://usegalaxy.org/cloudlaunch
>
> I chose "data cluster" when prompted and enter 5GB.
>
>
> On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
>> And is this a new instance you've just launched?  If so, how'd you launch
>> it?
>>
>>
>> On Fri, Dec 20, 2013 at 2:37 PM, greg <margeemail@gmail.com> wrote:
>>>
>>> Here's what I'm seeing:
>>>
>>> ubuntu@ip-10-182-195-79:/$ ls /
>>> bin  boot  dev  etc  export  home  initrd.img  lib  lib64  lost+found
>>> media  mnt  opt  proc  root  run  sbin  selinux  srv  sys  tmp  usr
>>> var  vmlinuz
>>> ubuntu@ip-10-182-195-79:/$ ls mnt
>>> cm  galaxyData  lost+found  transient_nfs
>>> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/
>>> export  files  tmp  upload_store
>>>
>>>
>>>
>>> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker <dannon.baker@gmail.com>
>>> wrote:
>>> > Does /mnt/galaxy exist, and does it have all of the expected galaxy
>>> > components?  /mnt/galaxyData might exist, but it should be either empty
>>> > or a
>>> > symlink to /mnt/galaxy if I remember correctly.
>>> >
>>> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you
>>> > should
>>> > always be using the latest stuff.
>>> >
>>> >
>>> > On Fri, Dec 20, 2013 at 2:13 PM, greg <margeemail@gmail.com> wrote:
>>> >>
>>> >> Thanks.  I was wrong before.  I actually do see a /mnt/galaxyData.
>>> >>
>>> >> Should I not being seeing that?  Am I not on cloudman 2.0?
>>> >>
>>> >> -Greg
>>> >>
>>> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker <dannon.baker@gmail.com>
>>> >> wrote:
>>> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes
>>> >> > have
>>> >> > been merged to a single 'galaxy' volume.  /mnt/galaxy is now your
>>> >> > single
>>> >> > persistent (by default, at least) volume, so, if you install your
>>> >> > tool
>>> >> > to
>>> >> > here and share everything should work as expected.
>>> >> >
>>> >> > -Dannon
>>> >> >
>>> >> >
>>> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg <margeemail@gmail.com> wrote:
>>> >> >>
>>> >> >> Hi guys,
>>> >> >>
>>> >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch
>>> >> >> and
>>> >> >> chose "data cluster" when prompted.
>>> >> >>
>>> >> >> Everything seems to have gone ok, but when I ssh in, I don't see
>>> >> >> /mnt/galaxyData
>>> >> >>
>>> >> >>
>>> >> >> Background:
>>> >> >>
>>> >> >> Basically we have a bioinformatics tool that needs SGE to run.  So I
>>> >> >> want to install it on a galaxy cloud instance and then provide the
>>> >> >> share string to other researchers.
>>> >> >>
>>> >> >> I did this successfully a year or two ago by installing it to
>>> >> >> /mnt/galaxyData.
>>> >> >>
>>> >> >> Thanks,
>>> >> >>
>>> >> >> Greg
>>> >> >> ___________________________________________________________
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>>> >> >>
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>>> >> >>   http://galaxyproject.org/search/mailinglists/
>>> >> >
>>> >> >
>>> >
>>> >
>>
>>