number of good components: 1
number of reads found = 1253 (from total of 1254) which came from 1252 pairs
## Read PathPair results: 1251 singletons, num pairs: 1, num pairs discarded: 0
total number of components = 1
working on subcomponent 0
method: combineSimilarPathsThatEndAtV(-1) with 1 paths
method: combineSimilarPathsThatEndAtV(2) with 1 paths
method: combineSimilarPathsThatEndAtV(1248) with 1 paths
method: combineSimilarPathsThatEndAtV(1223) with 1 paths
method: combineSimilarPathsThatEndAtV(-2) with 2 paths
Path Illustration:
==== PATH: [-1, 2, 1248, -2]
=== Read: [[-1, 2, 1248], []] count: 2
= Read: [[2], []] count: 1030
== Read: [[2, 1248], []] count: 23
=== Read: [[2, 1248, -2], []] count: 2
= Read: [[1248], []] count: 197
Final path reported: comp12043_c0_seq1 len=1658 ~FPKM=29.7 path=[2:0-1220 1248:1221-1657]
FinalPath: [-1, 2, 1248, -2] with support <1254, 1254>
total number of paths reported = 1 from 1 components
Done
SUCCESS[53682]: java -Xmx1G -jar /gpfs/cluster/isys/galaxy/Galaxy/trinityrnaseq_r2011-08-20/Butterfly/Butterfly.jar -N 25506261 -L 300 -F 300 -C chrysalis/RawComps.6/comp12043 -V 10 --stderr
SUCCESS[53680]: java -Xmx1G -jar /gpfs/cluster/isys/galaxy/Galaxy/trinityrnaseq_r2011-08-20/Butterfly/Butterfly.jar -N 25506261 -L 300 -F 300 -C chrysalis/RawComps.24/comp48425 -V 10 --stderr
SUCCESS[53681]: java -Xmx1G -jar /gpfs/cluster/isys/galaxy/Galaxy/trinityrnaseq_r2011-08-20/Butterfly/Butterfly.jar -N 25506261 -L 300 -F 300 -C chrysalis/RawComps.8/comp16349 -V 10 --stderr
Sorry, 1 of 53682 jobs failed.