Thanks for tracking down the problem - it sounds like it is a Galaxy bug then so I have created a Trello card (https://trello.com/c/bNEKfOWR). -John On Wed, Jul 30, 2014 at 7:06 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Wed, Jul 30, 2014 at 11:52 AM, Ulf Schaefer <Ulf.Schaefer@phe.gov.uk> wrote:
Dear Nate, dear Peter
Again, sorry for the delay in replying.
Yes I can. It looks like this
[galaxy@srv ~]$ cat /galaxy/database/files/081/dataset_81002.dat [galaxy@srv ~]$ ls /galaxy/database/files/081/dataset_81002_files/ blastdb.nhd blastdb.nhi blastdb.nhr blastdb.nin blastdb.nog blastdb.nsd blastdb.nsi blastdb.nsq
Good. Thanks for confirming that.
I think the simplest solution would be to put something in the primary file. Just a short string that gets the file size above 0.
That won't help with all the existing datasets out there - I think we rather need to fix something in the Galaxy code for composite files...
I personally have followed you initial suggestion and made the dbs available globally via the .loc file.
Thanks again Ulf
Great.
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