On Thu, Aug 1, 2013 at 9:44 AM, Dave Bouvier <
dave@bx.psu.edu> wrote:
Rodolfo,
In order to simplify tracking down this issue, could you provide the
changeset revision of Galaxy that is running on tamu.edu? To retrieve the
revision, execute the following command in your galaxy root directory:
hg id
To clarify, our understanding is that you installed the ncbi_blast_plus
repository from the main tool shed, and it installed correctly. You then
uninstalled the repository, and it also uninstalled properly. You then
attempted to reinstall the repository, and encountered the error message
cited in your email.
Can you confirm the above?
We further understand that the repository is stuck in the 'installing'
state. What options are available from the popup menu next to the
ncbi_blast_plus repository on the manage installed repositories page? If
'Deactivate or uninstall' is available, can you try uninstalling again, and
see if that functions correctly?
--Dave B.
On Mon, Aug 5, 2013 at 6:50 PM, Rodolfo Aramayo <raramayo@tamu.edu> wrote:
Dear Peter,
APOLOGIES for the delayed response
Please see below for details......
OK, so there are still issues with the Tool Shed itself,
but the BLAST issue seems to have gone away when
using a newer version (compiled). I'm working on using
the NCBI provided binaries if possible, but updating
the Galaxy BLAST+ bundle to a newer version of
the underlying BLAST tools is planned.
Thanks,
Peter
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