Hi Christian,
was the trinityrnaseq tool installed from the Tool Shed? Which repository? Just to check this is not a tool problem.

Cheers,
Nicola

Il 08.05.2015 10:44 Christian Schudoma (TSL) ha scritto:

Hi all,

I have encountered a problem when trying to run trinityrnaseq (Galaxy Tool Version 0.0.1) from Galaxy. Leaving the strand-specificity input parameter as "None" will prevent the form from being submitted. Instead, the strand-specificity input box will be highlighted in red and I'm asked to "Please verify this parameter."

Before the last update we were running a very very old instance of Galaxy (I think the update before the last was in 2013) from which we could submit trinity-jobs just fine. I found a commit from Aysam from late 2014 which does something in the immediate vicinity of the "Please verify this parameter" - message. (https://bitbucket.org/galaxy/galaxy-central/commits/bda732e549b7/), which I am guessing could have something to do with it.

Anyone got any ideas regarding this? Any help would be appreciated.

Thanks
Christian

--
Dr. Christian Schudoma
Bioinformatics Support Officer

Bioinformatics Group
The Sainsbury Laboratory
Norwich Research Park
Norwich NR4 7UH
United Kingdom
******************************
+44 (0) 1603 450 601
christian.schudoma@tsl.ac.uk
twitter: @cpt_bwt

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