Hi Nate, My "solution" was a bit of a hack and there may be better ways of doing it (I haven't read all the docs yet - just started with Galaxy last week) Python is not my strong suit and there may be more elegant ways, but here's how I usually connect thru our proxy: ---------------------------------- proxy_info = { 'user' : 'DOMAIN\\username', 'pass' : 'thisismypassword', 'host' : "proxy.yoyodyne.com", 'port' : 8080 } # build a new opener that uses a proxy requiring authorization proxy_support = urllib2.ProxyHandler({"http" : "http://%(user)s:%(pass)s@%(host)s:%(port)d" % proxy_info}) opener = urllib2.build_opener(proxy_support, urllib2.HTTPHandler) # install it urllib2.install_opener(opener) #then open the page with urllib2 page = urllib2.urlopen( cur_URL ) ---------------------------------- I was in a hurry so tweaked data_source.py, fetch.py, genomespace_file_browser.py, ucsc_proxy.py, and upload.py but it would make more sense to read the proxy_info from universe_wsgi.ini If you can point me at an example of a tool that reads from the config, I'll try and put it together. The best solution would be for Python to pick up the local $http_proxy env settings but I've never managed to get that working! --Russell
-----Original Message----- From: Nate Coraor [mailto:nate@bx.psu.edu] Sent: Friday, 2 December 2011 7:03 a.m. To: Smithies, Russell Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] proxy settings?
On Nov 29, 2011, at 9:35 PM, Smithies, Russell wrote:
Found the cure - just required adding urllib2.ProxyHandler in the data_source tools. Why doesn't Galaxy pick up the system http_proxy variables?
Hi Russell,
Thanks for tracking down the problem. Could you send a patch for this?
--nate
--Russell Smithies
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Smithies, Russell Sent: Wednesday, 30 November 2011 9:09 a.m. To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] proxy settings?
I'm new to Galaxy so I'm not sure if this a Galaxy or linux/apache question .
When I try to "Get Data" from UCSC or any other external site, I get a 407
Is the request going out as the 'galaxy' user or 'apache' or the user that's logged in? I already have http_proxy and ftp_proxy configured in /etc/profile (we're running Centos 6) but I assume there a correct place to configure this for Galaxy?
The error message I'm seeing is: An error occurred running this job: The remote data source application may be off line, please try again later. Error: ('http error', 407, 'Proxy Access Denied', <httplib.HTTPMessage instance at 0x35d2998>)
Any ideas?
Thanx,
Russell Smithies
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