[galaxy-dev] determination of errors

How does Galaxy determine that a job has failed? Does it simply see if the STDERR is empty? What happens if an application normally outputs to STDERR? This is a problem for our local installation, as I have enabled it to run as the local user on the backend cluster. If a user has an error in the .bashrc file, it will automatically write to STDERR, and all jobs, no matter what, are labelled as failing. David Hoover Helix Systems Staff