Am 04.08.2015 um 00:00 schrieb Tiago Rodrigues Antao:
On Mon, 03 Aug 2015 17:30:05 +0200 Björn Grüning <bjoern.gruening@gmail.com> wrote:
I would recommend you Galaxy Flavours. We have a few, for example RNA-Seq, ChIP-seq etc ... join us! :)
That was my first port of call, but they lacked quite a few tools. For example the RNA-Seq lacked tophat, cufflinks and cummrbund. I wanted to reuse as much as possible, but that was what made me stop.
Create a PR! https://github.com/bgruening/docker-recipes/blob/master/galaxy-rna-seq/Docke...
I am currently using the stable one (docker-galaxy-stable) and advancing from there. But I would prefer to use a "stock" one.
If you feel I can move this into it's own repository and out of docker-recipes. PR welcome! HiSat should be also included I guess. I hope to make this flavours community driven, so I really appreciate contributions to it. Ciao, Bjoern
Tiago