Hi Martin,
Thanks. I fixed the problems in the .xml files, now referring to “../match_library.py” .
Now the error I get when I try to reset the repository metadata is 502:
502 Bad Gateway
nginx/1.2.1
Regards,
Pieter
From: Martin Čech [mailto:marten@bx.psu.edu]
Sent: donderdag 19 maart 2015 15:02
To: Lukasse, Pieter; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] wrong validation message in toolshed
Hi Pieter,
there seems to be either multiple incorrect links to the file or the wrappers expect multiple files that are missing from the repo. E.g. your wrapper library_lookup.xml refers to a file /GCMS/match_library.py which does not exist. (on this
line: <code file="match_library.py" />)
After you correct these links you might want to 'Reset repository metadata'.
Martin
On Thu, Mar 19, 2015 at 8:18 AM Lukasse, Pieter <pieter.lukasse@wur.nl> wrote:
Hi ,
I’m getting this error message, which is not correct since the file IS available in the repository.
Metadata may have been defined for some items in revision 'f70b775dcaa5'. Correct
the following problems if necessary and reset metadata.
create_model.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the repository
to correct this error.
library_lookup.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the repository
to correct this error.
query_metexp.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the repository
to correct this error.
query_mass_repos.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the repository
to correct this error.
metams_lcms_annotate.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the
repository to correct this error.
rankfilterGCMS_tabular.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the
repository to correct this error.
metams_lcms_annotate.xml - This file refers to a missing file match_library.py. Upload a file named match_library.py to the
repository to correct this error.
I installed the package anyway and it works, which proves there is no real problem.
See
https://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_metabolomics2
Regards,
Pieter Lukasse
Wageningen UR, Plant Research International
Department of Bioinformatics (Bioscience)
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
T: +31-317481122;
M: +31-628189540;
skype: pieter.lukasse.wur
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/