Are you asking how Galaxy takes the user-entered parameters (requested in the tool XML file with <input> tags) and builds a command line string using the Cheetah-format template defined in the <command> tag? At least part of the answer to that is the ToolEvaluator object: https://github.com/galaxyproject/galaxy/blob/71cea6604d43c5fe6215f5656462ba6... Peter On Mon, Nov 21, 2016 at 6:37 PM, Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:
Hi Everyone, Does anyone know how execution of code files happens? Is there a function somewhere that fills the parameters in? Cheers, Katherine
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