Hi Greg, <br><br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div style="word-wrap: break-word;">Regarding the tools contained in fml_gff_converter_programs.tar.bz2, the following xml files are not well formed due to the malformed &quot;&lt;! -- TODO EDIT HERE &gt;&quot; tag:<div>

<br></div><div>fml_gff_converter_programs/galaxy/bed_to_gff3.xml</div><div>fml_gff_converter_programs/galaxy/gff3_to_bed.xml</div><div>fml_gff_converter_programs/galaxy/gff3_to_gtf.xml</div><div>fml_gff_converter_programs/galaxy/gtf_to_gff3.xml</div>

<div><br></div><div>In addition, none of these files include the required &quot;version&quot; attribute in the &lt;tool&gt; tag.</div></div></blockquote><div><br>Many thanks for pointing me the version number issue with tool configuration file. I forgot the same.<br>

<br></div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div style="word-wrap: break-word;"><div><br></div><div>The same goes for the files in ~/gff_groomer/fml_gff_groomer/galaxy - they are not well-formed due to the same &lt;! -- TODO EDIT HERE &gt; tag, and they do not include the &quot;version&quot; attribute int the &lt;tool&gt; tag.  Tools tags should look something like this:</div>

<div><br></div><div>&lt;tool id=&quot;fml_bed2gff&quot; name=&quot;BED_to_GFF3&quot; version=&quot;1.0.0&quot;&gt;</div><div><br></div><div>I&#39;ve made some enhancements to the tool shed code that will display errors like this ( rather than resulting in the current server error ), so the next time I update the tool shed ( within the next couple of days ), this problem will be corrected.</div>

<div><br></div><div>In the meantime, if you make the above corrections, you should have no problems uploading your tools to the tool shed.</div><div><br></div><div>Thanks very much for pointing out these issues, and for taking the time to contribute your tools to the Galaxy community.</div>

<div><br></div></div></blockquote><div> <br>Yes I did the changes accordingly and now it uploaded into the Tool shed. Thanks for your quick fix. <br></div><div><br><font face="&#39;comic sans ms&#39;, sans-serif">regards, Vipin </font></div>

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