It's been a while since I've had to setup a Galaxy instance and scramble the pbs_python egg,   but I have installed pbs_python by hand for a different project recently and discovered there are some issues with pbs_python and TORQUE 4.2+ -- I think the symptom was different though.   If I remember right it would compile successfully but would give undefined symbol errors when the Python module is loaded,  so my information won't be too much help to you since you can't even get it to compile now but once you get past that you will face the same problem I did.    It turned out that there were several internal functions that were being included in libtorque that were being wrapped by pbs_python but were no longer available in newer versions of lib torque (what I think really happened is TORQUE switched from gcc to g++ for compilation and "public" API functions got wrapped in extern "C" {} so their names didn't get mangled.   I was able to remove these from pbs_python and recompile and reinstall it to eliminate the undefined symbol errors.

I've opened a ticket with the pbs_python developer:  https://oss.trac.surfsara.nl/pbs_python/ticket/34
this lists the functions that you need to remove from pbs_wrap.c and pbs.py  (somewhere I made a note of the exact line numbers that need to be removed)

-- 
Glen L. Beane
Software Engineer III
The Jackson Laboratory
(207) 288-6153

From: Frost Mitchell <frost.b.mitchell@gmail.com>
Date: Thursday, July 11, 2013 7:38 PM
To: "galaxy-dev@bx.psu.edu" <galaxy-dev@bx.psu.edu>
Subject: [galaxy-dev] pbs_python Scramble Continues to Fail

Hi. We are attempting to set up a Galaxy instance on our local TORQUE cluster, but the Documentation instructions to scramble as such:

LIBTORQUE_DIR=/path/to/libtorque python scripts/scramble.py -e pbs_python

Gives the following barrage of output:

(galaxy_env)[root@galaxy galaxy-dist]# LIBTORQUE_DIR=/rc/tools/free/redhat_6_x86_64/torque-4.2.2/lib/ python scripts/scramble.py -e pbs_python --config=universe_wsgi.ini
fetch_one(): Using existing source, remove to download again:
  /rc/galaxy/galaxy-dist/scripts/scramble/archives/pbs_python-4.1.0.tar.gz
unpack_source(): Removing old build directory at:
  /rc/galaxy/galaxy-dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/pbs_python
unpack_source(): Unpacked to:
  /rc/galaxy/galaxy-dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/pbs_python
copy_build_script(): Using build script /rc/galaxy/galaxy-dist/scripts/scramble/scripts/pbs_python.py
run_scramble_script(): Beginning build
run_scramble_script(): Executing in /rc/galaxy/galaxy-dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/pbs_python:
  /rc/galaxy/tools/galaxy_env/bin/python scramble.py
checking for pbs-config... /rc/tools/free/redhat_6_x86_64/torque-4.2.2/lib//../bin/pbs-config
Found torque version: 4.2.2
checking for python... /rc/galaxy/tools/galaxy_env/bin/python
checking for python version... 2.6
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.6/site-packages
checking for python extension module directory... ${exec_prefix}/lib64/python2.6/site-packages
configure: creating ./config.status
config.status: creating Makefile
config.status: creating setup.py
scramble(): Patching setup.py
running egg_info
creating src/pbs_python.egg-info
writing src/pbs_python.egg-info/PKG-INFO
writing top-level names to src/pbs_python.egg-info/top_level.txt
writing dependency_links to src/pbs_python.egg-info/dependency_links.txt
writing manifest file 'src/pbs_python.egg-info/SOURCES.txt'
reading manifest file 'src/pbs_python.egg-info/SOURCES.txt'
writing manifest file 'src/pbs_python.egg-info/SOURCES.txt'
running bdist_egg
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib.linux-x86_64-2.6
copying src/pbs.py -> build/lib.linux-x86_64-2.6
copying src/PBSQuery.py -> build/lib.linux-x86_64-2.6
running build_ext
building '_pbs' extension
creating build/temp.linux-x86_64-2.6
creating build/temp.linux-x86_64-2.6/src
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DTORQUE_OLD -I/usr/include/python2.6 -c src/pbs_wrap.c -o build/temp.linux-x86_64-2.6/src/pbs_wrap.o
src/pbs_wrap.c:124:20: error: Python.h: No such file or directory
src/pbs_wrap.c:730: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:785: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:806: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c: In function ‘SWIG_Python_AddErrorMsg’:
src/pbs_wrap.c:853: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:853: error: (Each undeclared identifier is reported only once
src/pbs_wrap.c:853: error: for each function it appears in.)
src/pbs_wrap.c:853: error: ‘type’ undeclared (first use in this function)
src/pbs_wrap.c:854: error: ‘value’ undeclared (first use in this function)
src/pbs_wrap.c:855: error: ‘traceback’ undeclared (first use in this function)
src/pbs_wrap.c:857: warning: implicit declaration of function ‘PyErr_Occurred’
src/pbs_wrap.c:857: warning: implicit declaration of function ‘PyErr_Fetch’
src/pbs_wrap.c:859: error: ‘old_str’ undeclared (first use in this function)
src/pbs_wrap.c:859: warning: implicit declaration of function ‘PyObject_Str’
src/pbs_wrap.c:860: warning: implicit declaration of function ‘PyErr_Clear’
src/pbs_wrap.c:861: warning: implicit declaration of function ‘Py_XINCREF’
src/pbs_wrap.c:862: warning: implicit declaration of function ‘PyErr_Format’
src/pbs_wrap.c:862: warning: implicit declaration of function ‘PyString_AsString’
src/pbs_wrap.c:863: warning: implicit declaration of function ‘Py_DECREF’
src/pbs_wrap.c:866: warning: implicit declaration of function ‘PyErr_SetString’
src/pbs_wrap.c:866: error: ‘PyExc_RuntimeError’ undeclared (first use in this function)
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1034: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1042: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1053: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1060: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1106: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1208: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1219: error: expected specifier-qualifier-list before ‘PyObject’
src/pbs_wrap.c: In function ‘SWIG_Python_CheckImplicit’:
src/pbs_wrap.c:1231: error: ‘PySwigClientData’ has no member named ‘implicitconv’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1234: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1243: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c: In function ‘PySwigClientData_Del’:
src/pbs_wrap.c:1298: warning: implicit declaration of function ‘Py_XDECREF’
src/pbs_wrap.c:1298: error: ‘PySwigClientData’ has no member named ‘newraw’
src/pbs_wrap.c:1299: error: ‘PySwigClientData’ has no member named ‘newargs’
src/pbs_wrap.c:1300: error: ‘PySwigClientData’ has no member named ‘destroy’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1306: error: expected specifier-qualifier-list before ‘PyObject_HEAD’
src/pbs_wrap.c:1313: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1319: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1337: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1343: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1349: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1372: error: expected declaration specifiers or ‘...’ before ‘FILE’
src/pbs_wrap.c: In function ‘PySwigObject_print’:
src/pbs_wrap.c:1377: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:1377: error: ‘repr’ undeclared (first use in this function)
src/pbs_wrap.c:1377: warning: implicit declaration of function ‘PySwigObject_repr’
src/pbs_wrap.c:1380: warning: implicit declaration of function ‘fputs’
src/pbs_wrap.c:1380: error: ‘fp’ undeclared (first use in this function)
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1388: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c: In function ‘PySwigObject_compare’:
src/pbs_wrap.c:1399: error: ‘PySwigObject’ has no member named ‘ptr’
src/pbs_wrap.c:1400: error: ‘PySwigObject’ has no member named ‘ptr’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1404: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1406: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1413: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1418: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1422: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1456: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1473: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1489: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1501: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1513: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1561: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘swigobject_methods’
src/pbs_wrap.c:1573: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1580: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1688: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1706: error: expected specifier-qualifier-list before ‘PyObject_HEAD’
src/pbs_wrap.c:1713: error: expected declaration specifiers or ‘...’ before ‘FILE’
src/pbs_wrap.c: In function ‘PySwigPacked_print’:
src/pbs_wrap.c:1716: error: ‘fp’ undeclared (first use in this function)
src/pbs_wrap.c:1717: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1717: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c:1721: error: ‘PySwigPacked’ has no member named ‘ty’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1726: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1737: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c: In function ‘PySwigPacked_compare’:
src/pbs_wrap.c:1751: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c:1752: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’
src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:1757: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1759: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1766: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1772: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1781: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1851: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1871: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1887: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1893: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:1903: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1954: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:1969: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2060: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2092: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2114: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:2178: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2199: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:2217: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:2238: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c: In function ‘SWIG_Python_GetModule’:
src/pbs_wrap.c:2259: warning: implicit declaration of function ‘PyCObject_Import’
src/pbs_wrap.c:2260: warning: assignment makes pointer from integer without a cast
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2274: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c: In function ‘SWIG_Python_DestroyModule’:
src/pbs_wrap.c:2315: warning: implicit declaration of function ‘SWIG_This’
src/pbs_wrap.c: In function ‘SWIG_Python_SetModule’:
src/pbs_wrap.c:2320: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘swig_empty_runtime_method_table’
src/pbs_wrap.c:2320: error: ‘swig_empty_runtime_method_table’ undeclared (first use in this function)
src/pbs_wrap.c:2320: error: expected expression before ‘]’ token
src/pbs_wrap.c:2322: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:2322: error: ‘module’ undeclared (first use in this function)
src/pbs_wrap.c:2322: warning: implicit declaration of function ‘Py_InitModule’
src/pbs_wrap.c:2324: error: ‘pointer’ undeclared (first use in this function)
src/pbs_wrap.c:2324: warning: implicit declaration of function ‘PyCObject_FromVoidPtr’
src/pbs_wrap.c:2326: warning: implicit declaration of function ‘PyModule_AddObject’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2333: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c: In function ‘SWIG_Python_TypeQuery’:
src/pbs_wrap.c:2342: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:2342: error: ‘cache’ undeclared (first use in this function)
src/pbs_wrap.c:2342: warning: implicit declaration of function ‘SWIG_Python_TypeCache’
src/pbs_wrap.c:2343: error: ‘key’ undeclared (first use in this function)
src/pbs_wrap.c:2343: warning: implicit declaration of function ‘PyString_FromString’
src/pbs_wrap.c:2344: error: ‘obj’ undeclared (first use in this function)
src/pbs_wrap.c:2344: warning: implicit declaration of function ‘PyDict_GetItem’
src/pbs_wrap.c:2347: warning: implicit declaration of function ‘PyCObject_AsVoidPtr’
src/pbs_wrap.c:2353: warning: implicit declaration of function ‘PyDict_SetItem’
src/pbs_wrap.c: In function ‘SWIG_Python_AddErrMesg’:
src/pbs_wrap.c:2372: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:2372: error: ‘type’ undeclared (first use in this function)
src/pbs_wrap.c:2373: error: ‘value’ undeclared (first use in this function)
src/pbs_wrap.c:2374: error: ‘traceback’ undeclared (first use in this function)
src/pbs_wrap.c:2377: error: ‘old_str’ undeclared (first use in this function)
src/pbs_wrap.c: In function ‘SWIG_Python_ArgFail’:
src/pbs_wrap.c:2399: warning: implicit declaration of function ‘snprintf’
src/pbs_wrap.c:2399: warning: incompatible implicit declaration of built-in function ‘snprintf’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2407: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2415: error: expected declaration specifiers or ‘...’ before ‘PyObject’
src/pbs_wrap.c: In function ‘SWIG_Python_TypeError’:
src/pbs_wrap.c:2429: error: ‘obj’ undeclared (first use in this function)
src/pbs_wrap.c:2431: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:2431: error: ‘str’ undeclared (first use in this function)
src/pbs_wrap.c:2434: error: ‘PyExc_TypeError’ undeclared (first use in this function)
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2453: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2499:4: error: #error "This python version requires swig to be run with the '-classic' option"
src/pbs_wrap.c:2530: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c: In function ‘get_error’:
src/pbs_wrap.c:2636: warning: implicit declaration of function ‘printf’
src/pbs_wrap.c:2636: warning: incompatible implicit declaration of built-in function ‘printf’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2656: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c: In function ‘SWIG_CanCastAsInteger’:
src/pbs_wrap.c:2712: error: ‘errno’ undeclared (first use in this function)
src/pbs_wrap.c:2712: error: ‘EDOM’ undeclared (first use in this function)
src/pbs_wrap.c:2712: error: ‘ERANGE’ undeclared (first use in this function)
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2736: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2775: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2793: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:2813: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:2830: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:2838: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c: In function ‘attrl___str__’:
src/pbs_wrap.c:2893: warning: incompatible implicit declaration of built-in function ‘snprintf’
src/pbs_wrap.c: In function ‘delete_attrl’:
src/pbs_wrap.c:2900: warning: incompatible implicit declaration of built-in function ‘printf’
src/pbs_wrap.c: In function ‘attropl___str__’:
src/pbs_wrap.c:2908: warning: incompatible implicit declaration of built-in function ‘snprintf’
src/pbs_wrap.c: In function ‘delete_attropl’:
src/pbs_wrap.c:2915: warning: incompatible implicit declaration of built-in function ‘printf’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:2923: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2967: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:2983: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:3008: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3055: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3100: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3146: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3159: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3189: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3236: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3275: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3297: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3336: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3358: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3397: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3419: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3449: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3471: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3493: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3514: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3521: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3551: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3596: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3635: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3657: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3696: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3718: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3757: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3779: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3809: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3831: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3853: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3874: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3881: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3911: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:3966: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4005: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4027: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4057: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4104: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4143: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4165: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4172: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:4187: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4195: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:4215: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4223: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4257: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4315: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4413: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4438: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4451: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4464: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4510: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4532: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4554: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4612: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4658: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4774: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4832: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4899: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:4957: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5066: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5148: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5179: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5225: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5283: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5341: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5454: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5512: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5578: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5709: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5828: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:5959: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6078: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6209: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6319: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6362: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6393: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6424: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6458: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6480: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6502: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6536: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6570: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6595: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6617: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6630: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6643: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6664: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:6679: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6687: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:6702: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6710: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6731: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6776: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6830: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6867: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6921: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6942: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6955: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:6968: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:6980: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7053: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7078: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:7098: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7106: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘SwigMethods’
src/pbs_wrap.c:7503: error: expected specifier-qualifier-list before ‘PyObject’
src/pbs_wrap.c:7509: error: expected specifier-qualifier-list before ‘PyObject_HEAD’
src/pbs_wrap.c:7513: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7518: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7531: error: expected declaration specifiers or ‘...’ before ‘FILE’
src/pbs_wrap.c: In function ‘swig_varlink_print’:
src/pbs_wrap.c:7532: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:7532: error: ‘str’ undeclared (first use in this function)
src/pbs_wrap.c:7532: warning: implicit declaration of function ‘swig_varlink_str’
src/pbs_wrap.c:7533: warning: implicit declaration of function ‘fprintf’
src/pbs_wrap.c:7533: warning: incompatible implicit declaration of built-in function ‘fprintf’
src/pbs_wrap.c:7533: error: ‘fp’ undeclared (first use in this function)
src/pbs_wrap.c: In function ‘swig_varlink_dealloc’:
src/pbs_wrap.c:7541: error: ‘swig_varlinkobject’ has no member named ‘vars’
src/pbs_wrap.c:7543: error: ‘swig_globalvar’ has no member named ‘next’
src/pbs_wrap.c:7544: warning: implicit declaration of function ‘free’
src/pbs_wrap.c:7544: warning: incompatible implicit declaration of built-in function ‘free’
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:7550: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7568: error: expected declaration specifiers or ‘...’ before ‘PyObject’
src/pbs_wrap.c: In function ‘swig_varlink_setattr’:
src/pbs_wrap.c:7570: error: ‘swig_varlinkobject’ has no member named ‘vars’
src/pbs_wrap.c:7573: error: ‘swig_globalvar’ has no member named ‘set_attr’
src/pbs_wrap.c:7573: error: ‘p’ undeclared (first use in this function)
src/pbs_wrap.c:7576: error: ‘swig_globalvar’ has no member named ‘next’
src/pbs_wrap.c:7579: error: ‘PyExc_NameError’ undeclared (first use in this function)
src/pbs_wrap.c: At top level:
src/pbs_wrap.c:7584: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7636: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7646: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:7662: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
src/pbs_wrap.c:7675: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c:7702: error: expected ‘)’ before ‘*’ token
src/pbs_wrap.c: In function ‘init_pbs’:
src/pbs_wrap.c:7755: error: ‘PyObject’ undeclared (first use in this function)
src/pbs_wrap.c:7755: error: ‘m’ undeclared (first use in this function)
src/pbs_wrap.c:7755: error: ‘d’ undeclared (first use in this function)
src/pbs_wrap.c:7755: warning: left-hand operand of comma expression has no effect
src/pbs_wrap.c:7758: warning: implicit declaration of function ‘SWIG_Python_FixMethods’
src/pbs_wrap.c:7758: error: ‘SwigMethods’ undeclared (first use in this function)
src/pbs_wrap.c:7761: warning: implicit declaration of function ‘PyModule_GetDict’
src/pbs_wrap.c:7764: warning: implicit declaration of function ‘SWIG_Python_InstallConstants’
src/pbs_wrap.c:7767: warning: implicit declaration of function ‘SWIG_Python_SetConstant’
src/pbs_wrap.c:7767: warning: implicit declaration of function ‘SWIG_FromCharPtr’
src/pbs_wrap.c:7966: warning: implicit declaration of function ‘SWIG_From_int’
src/pbs_wrap.c:8036: warning: implicit declaration of function ‘PyDict_SetItemString’
src/pbs_wrap.c:8036: warning: implicit declaration of function ‘SWIG_globals’
src/pbs_wrap.c:8037: warning: implicit declaration of function ‘SWIG_Python_addvarlink’
src/pbs_wrap.c:8037: error: ‘Swig_var_pbs_errno_get’ undeclared (first use in this function)
src/pbs_wrap.c:8037: error: ‘Swig_var_pbs_errno_set’ undeclared (first use in this function)
src/pbs_wrap.c:8038: error: ‘Swig_var_pbs_server_get’ undeclared (first use in this function)
src/pbs_wrap.c:8038: error: ‘Swig_var_pbs_server_set’ undeclared (first use in this function)
src/pbs_wrap.c:8048: error: ‘Swig_var_log_event_mask_get’ undeclared (first use in this function)
src/pbs_wrap.c:8048: error: ‘Swig_var_log_event_mask_set’ undeclared (first use in this function)
src/pbs_wrap.c:8049: error: ‘Swig_var_chk_file_sec_stderr_get’ undeclared (first use in this function)
src/pbs_wrap.c:8049: error: ‘Swig_var_chk_file_sec_stderr_set’ undeclared (first use in this function)
src/pbs_wrap.c:8050: error: ‘Swig_var_log_buffer_get’ undeclared (first use in this function)
src/pbs_wrap.c:8050: error: ‘Swig_var_log_buffer_set’ undeclared (first use in this function)
src/pbs_wrap.c:8073: error: ‘Swig_var_msg_daemonname_get’ undeclared (first use in this function)
src/pbs_wrap.c:8073: error: ‘Swig_var_msg_daemonname_set’ undeclared (first use in this function)
error: command 'gcc' failed with exit status 1
Traceback (most recent call last):
  File "scripts/scramble.py", line 50, in <module>
    egg.scramble()
  File "/rc/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 57, in scramble
    self.run_scramble_script()
  File "/rc/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 206, in run_scramble_script
    raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for pbs_python 4.1.0

Any tips or tricks for a fix would be much appreciated. If it's the only alternative, we could run jobs through DRMAA, though from what I have been reading plenty of issues arise with that as well.

Thanks,

Frost Mitchell
Department of Research Computing
Utah State University

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