Somehow I seem to miss something when configuring our latest up-to-date galaxy_central version to use the galaxy toolshed.

When as admin I want to install a tool I can browse the given 2 repositories and select view tools.

When I select install to local galaxy it drops an error on 2 tools I tested thus far:

 

Error Traceback:

View as:   Interactive  |  Text  |  XML (full)

URL: http://galaxy02:8080/galaxy/admin_toolshed/install_repository?tool_shed_url=http://toolshed.g2.bx.psu.edu&repo_info_dict=293ac398f098023d041933b74935d0b4771444a6:7b22636f646f6e6c6f676f223a205b22436f646f6e2062617365642073657175656e6365206c6f676f2067656e657261746f722e222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f64617669646d75727068792f636f646f6e6c6f676f222c2022323037313634353062653837225d7d&includes_tools=True

Module weberror.evalexception.middleware:364 in respond         view

>>  app_iter = self.application(environ, detect_start_response)

Module paste.debug.prints:98 in __call__         view

>>  environ, self.app)

Module paste.wsgilib:539 in intercept_output         view

>>  app_iter = application(environ, replacement_start_response)

Module paste.recursive:80 in __call__         view

>>  return self.application(environ, start_response)

Module paste.httpexceptions:632 in __call__         view

>>  return self.application(environ, start_response)

Module galaxy.web.framework.base:160 in __call__         view

>>  body = method( trans, **kwargs )

Module galaxy.web.framework:173 in decorator         view

>>  return func( self, trans, *args, **kwargs )

Module galaxy.web.controllers.admin_toolshed:322 in install_repository         view

>>  tool_panel_section_select_field = build_tool_panel_section_select_field( trans )

Module galaxy.web.controllers.admin_toolshed:804 in build_tool_panel_section_select_field         view

>>  options.append( ( tool_section.name, tool_section.id ) )

AttributeError: 'ToolSectionLabel' object has no attribute 'name'

 

 

The steps I took:

Updated the universe to load the extra shed_tool_conf.xml file.

Set the toolpath to "../toolshedtools" in shed_tool_conf.xml

Gave the directory read write permissions for galaxy user:dev_group

Restarted galaxy.

 

Any additional configs to make somewhere? In the original tool_conf.xml file?

 

Alex