I noticed this was a problem with the transition to setting metadata externally by default. Return code is completely ignored now (always has been when external metadata setting was enabled). Didn't have time to test the patch, but did post link to one in trello some time ago. On a train without wifi so I cannot find the link, can you apply it and test it out?
Hi all,
We have a Galaxy instance that we are regularly keeping up to date following the Galaxy main, so we have the current version (fd4113962c32 commit).
For us, since a few updates (unfortunately, I don't know when it started), the "exit_code" tag is not working anymore. I made the simplest tool to confirm :
----------------
<tool id="tool_to_come" name="tool_to_come">
<description></description>
<command interpreter="bash">
test.sh $input $output
</command>
<inputs>
<param name="input" type="text" value="7" label="Param" />
</inputs>
<outputs>
<data name="output" format="fasta" label="Output" />
</outputs>
<stdio>
<exit_code range="12" level="fatal" description="Grave probleme !" />
</stdio>
<help>
**Tool documentation**
</help>
</tool>
---------------
#!/bin/bash
set -e
if [ "$1" -ne 10 ]; then
exit 12
else
echo "Yeah !" > $2
fi
----------------
Anyway, it still doesn't work as it used to...
Am I the only one to have the problem ? Can you help me ?
Cheers,
Mathieu (Rennes - France)
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