you can have your workflow hide intermediate files.  also, renaming files helps.  i usually recommend to users to split their work into several histories rather than trying to do everything in one huge history (e.g. read qc, assembly, gene annotation, read mapping, expression analysis)

On Wed, Feb 2, 2011 at 4:54 AM, Leandro Hermida <softdev@leandrohermida.com> wrote:
Hi everyone,

Are there any capabilities or tools in Galaxy to organize long histories with many datasets?

best,
Leandro

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