Tophat2 output on accepted hits, deletions and insertions is fine whereas <span style="white-space:pre-wrap">splice junctions output is only:</span><div><span style="white-space:pre-wrap"><br></span></div><div><pre style="word-wrap:break-word;white-space:pre-wrap">
track name=junctions description=&quot;TopHat junctions&quot;</pre><pre style="word-wrap:break-word;white-space:pre-wrap"><br></pre><pre style="word-wrap:break-word;white-space:pre-wrap">I am running tophat2 with hg19 reference genome? What might be the problem?</pre>
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