details: http://www.bx.psu.edu/hg/galaxy/rev/b7c6a418c571 changeset: 3036:b7c6a418c571 user: dan date: Mon Nov 16 10:57:31 2009 -0500 description: Have Extract Genomic DNA tool copy metadata from input file. This will allow the tool to keep column assignments when outputing interval format. diffstat: tools/extract/extract_genomic_dna.xml | 4 ++-- 1 files changed, 2 insertions(+), 2 deletions(-) diffs (18 lines): diff -r 1f8542d78671 -r b7c6a418c571 tools/extract/extract_genomic_dna.xml --- a/tools/extract/extract_genomic_dna.xml Sat Nov 14 20:32:41 2009 -0500 +++ b/tools/extract/extract_genomic_dna.xml Mon Nov 16 10:57:31 2009 -0500 @@ -1,4 +1,4 @@ -<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.0"> +<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.1"> <description>using coordinates from assembled/unassembled genomes</description> <command interpreter="python">extract_genomic_dna.py $input $out_file1 -1 ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol} -d $dbkey -o $out_format -g ${GALAXY_DATA_INDEX_DIR}</command> <inputs> @@ -12,7 +12,7 @@ </param> </inputs> <outputs> - <data format="fasta" name="out_file1"> + <data format="fasta" name="out_file1" metadata_source="input"> <change_format> <when input="out_format" value="interval" format="interval" /> </change_format>