Hi there,

 

I know  Galaxy already has a SAM-to-BAM converter, but part of my exercise/task is to incorporate a script that uses samtools' view command. I get this error:

 

[samopen] SAM header is present: 66338 sequences.

 

according to Galaxy. But this might not be an error at all. Is  there any way that I could tell Galaxy to ignore this and just continue with the script?

 

Thanks in advance! Any help would be greatly appreciated.

 

CL