details: http://www.bx.psu.edu/hg/galaxy/rev/87da8cd1f091 changeset: 3513:87da8cd1f091 user: fubar: ross Lazarus at gmail period com date: Wed Mar 10 20:59:11 2010 -0500 description: Remove old Lmap from datatypes_conf.xml.sample - now deprecated from genetics.py Causing buildbot to barf. diffstat: datatypes_conf.xml.sample | 1 - lib/galaxy/web/controllers/library_common.py | 3 ++- run_functional_tests.sh | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diffs (43 lines): diff -r 53ddb4b728f7 -r 87da8cd1f091 datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample Wed Mar 10 19:48:28 2010 -0500 +++ b/datatypes_conf.xml.sample Wed Mar 10 20:59:11 2010 -0500 @@ -194,7 +194,6 @@ <!-- genome graphs ucsc file - first col is always marker then numeric values to plot --> <datatype extension="gg" type="galaxy.datatypes.genetics:GenomeGraphs"/> <!-- part of linkage format pedigree --> - <datatype extension="lmap" type="galaxy.datatypes.genetics:Lmap" display_in_upload="true"/> <datatype extension="malist" type="galaxy.datatypes.genetics:MAlist" display_in_upload="true"/> <!-- linkage format pedigree (separate .map file) --> <datatype extension="lped" type="galaxy.datatypes.genetics:Lped" display_in_upload="true"> diff -r 53ddb4b728f7 -r 87da8cd1f091 lib/galaxy/web/controllers/library_common.py --- a/lib/galaxy/web/controllers/library_common.py Wed Mar 10 19:48:28 2010 -0500 +++ b/lib/galaxy/web/controllers/library_common.py Wed Mar 10 20:59:11 2010 -0500 @@ -1111,7 +1111,7 @@ # is composite - must return a zip of contents and the html file itself - ugh - should be reversible at upload! # use act_on_multiple_datasets( self, trans, cntrller, library_id, ldda_ids='', **kwd ) since it does what we need kwd['do_action'] = 'zip' - return self.act_on_multiple_datasets( trans, cntrller, library_id, ldda_ids=id, **kwd ) + return self.act_on_multiple_datasets( trans, cntrller, library_id, ldda_ids=[id,], **kwd ) else: mime = trans.app.datatypes_registry.get_mimetype_by_extension( ldda.extension.lower() ) trans.response.set_content_type( mime ) @@ -1258,6 +1258,7 @@ messagetype = 'error' else: ldda_ids = util.listify( ldda_ids ) + log.debug('## act on multiple got %s' % ldda_ids) if action == 'import_to_history': history = trans.get_history() if history is None: diff -r 53ddb4b728f7 -r 87da8cd1f091 run_functional_tests.sh --- a/run_functional_tests.sh Wed Mar 10 19:48:28 2010 -0500 +++ b/run_functional_tests.sh Wed Mar 10 20:59:11 2010 -0500 @@ -1,7 +1,7 @@ #!/bin/sh # A good place to look for nose info: http://somethingaboutorange.com/mrl/projects/nose/ - +export PATH=/usr/local/bin:$PATH rm -f run_functional_tests.log if [ ! $1 ]; then