On Sep 14, 2011, at 2:07 PM, Chorny, Ilya wrote:

It’s easy to hard code in the ini but I want to be able to set the number of processors as a parameter.


that would be a nice modification to galaxy.  I've always wanted parameterized job runners, so I could include variables in a job runner specification in the .ini file and then that would get filled in based on some variable set by the job template 




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Glen L. Beane
Senior Software Engineer
The Jackson Laboratory
(207) 288-6153