Hi all - I think there is a problem with the Picard HSMetrics wrapper in Galaxy.  The wrapper accepts a BAM files and a BED file.  However the BED file isn&#39;t really in a BED format...it requires a SAM header before the BED lines.  This really isn&#39;t a BED file format.  I&#39;m not quite sure how Galaxy should deal with this...maybe a file format specific for Picard formatted BED file.  <div>
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