On Fri, Jun 21, 2013 at 5:07 AM, jean-François Taly <jean-francois.taly@crg.eu> wrote:

Dear all,

I am having the same problem as Linda with a fresh installation of version 20130603.
In the thread of her mail Dannon Baker said :

"That said, this doesn't resolve the mysql index issues, which I'm currently working on. I hope to have a fix for them available soon, though."

I would like to know if what is the status of this thread. Should I use the solution provided in Linda's mail (CREATE INDEX ix_history_slug ON history (slug(1000));)

Thx a lot for your help

Best

Jean-François

On 06/05/2013 05:12 PM, Linda Cham wrote:

Hi. I am new to the Galaxy forum and I am trying to setup a new local Galaxy instance with MySQL on RH6.2 x86_64.

On a newly installed OS node, using the hg clone command (hg clone https://bitbucket.org/galaxy/galaxy-dist#stable) which gets the current Galaxy 20130603 image, I am getting the following errors when running run.sh:
File "build/bdist.linux-x86_64-ucs4/egg/MySQLdb/cursors.py", line 173, in execute
self.errorhandler(self, exc, value)
File "build/bdist.linux-x86_64-ucs4/egg/MySQLdb/connections.py", line 36, in defaulterrorhandler
raise errorclass, errorvalue
OperationalError: (OperationalError) (1170, "BLOB/TEXT column 'slug' used in key specification without a key length") 'CREATE INDEX ix_history_slug ON history (slug)' ()

Reading the forum, someone stated it can be bypass by running the CREATE INDEX.

mysql> CREATE INDEX ix_history_slug ON history (slug(1000));
Query OK, 0 rows affected (0.09 sec)
Records: 0 Duplicates: 0 Warnings: 0
-- 
#####################################
Jean-François Taly
Bioinformatician

Bioinformatics Core Facility
http://biocore.crg.cat
CRG - Centre de Regulació Genòmica (Room 439)
Parc de Recerca Biomèdica de Barcelona (PRBB)
Doctor Aiguader, 88
08003 Barcelona
Spain

email: jean-francois.taly@crg.eu
phone: +34 93 316 0202
fax: +34 93 316 0099
#####################################
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