Hi Shane, that is sadly true. Totally forget to migrate the samtools package to the main toolshed. Will do that week. Sorry for the inconvenience and thanks for pointing that out! Bjoern
I've had a bit of a time trying to get Bismark working on our Galaxy instance. The install doesn't work because of the dependency on samtools 0.1.18 but in fact it requires samtools 0.1.19. I have a build of that installed as standard on our system so putting a symlink to that in the place of the samtools built for the bismark wrapper makes it work - I was seeing issues where the BAM file wasn't created and noticed in Bjoern's readme.rst that said it required samtools 0.1.19 or later.
Shane
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Dr Shane Sturrock shane.sturrock@biomatters.com Senior Scientist Tel: +64 (0) 9 379 5064 76 Anzac Ave Auckland New Zealand
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