Hi Eric

I'm having a look at the GRT. We're collecting metrics on our local Galaxy server, I'm just trying to understand how you envision these metrics getting into the GRT?

Peter

On 22 February 2016 at 07:31, Eric Rasche <esr@tamu.edu> wrote:

Hi peter,

I've been working on this in the past but got caught up in other projects. There's work for a server-side component here (maybe 50% done), the client side stuff could all be done through collectl but I was having issues actually collecting collectl data that had put the project on hold temporarily.

https://github.com/erasche/galactic-radio-telescope

I'd be very, very interested in finishing this project up.

Cheers,
Eric

On 02/21/2016 11:13 PM, Peter van Heusden wrote:

Hi there

We're researching the resource (CPU time and memory) requirements for RNA STAR at the moment. Specifically, we'd like to build up a database of input size to resource usage so that we can use this to feed a dynamic destination mapper (currently our STAR configuration uses a thumbsuck for RAM and CPU requirements that is not optimal but works in many cases).

Has anyone collected these metrics before? And more generally, is anyone collecting metrics for a range of bioinformatics tools? A database like this could be very useful!

Thanks!

Peter

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Eric Rasche
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Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
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esr@tamu.edu
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