29 Jul
2011
29 Jul
'11
11:28 p.m.
Hi, I am setting up SGE in our galaxy mirror. One problem I have is that I cannot export environment variables of the specific users running the galaxy service. On command line, I did this by qsub -V script.sh. or add a line #$ -V in script.sh I tried to change /lib/galaxy/jobs/runners/sge.py and lib/galaxy/jobs/runners/drmaae.py by adding a line #$ -V under sge_template = """#!/bin/sh #$ -S /bin/sh but this did not help. Any idea is very appreciated! Chaolin