Anyone please?? I cannot even start the galaxy server. Makes me wonder if something in the database got messed up.

On Apr 4, 2014, at 11:16 AM, Ravi Alla <ravi.alla@berkeley.edu> wrote:

Hi devs,

I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this?

 File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory

    app = UniverseApplication( global_conf = global_conf, **kwargs )

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in __init__

    self.job_manager = manager.JobManager( self )

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line 37, in __init__

    self.job_handler.start()

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 35, in start

    self.job_queue.start()

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 78, in start

    self.__check_jobs_at_startup()

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 109, in __check_jobs_at_startup

    JobWrapper( job, self ).fail( 'This tool was disabled before the job completed.  Please contact your Galaxy administrator.' )

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", line 761, in fail

    self.app.object_store.update_from_file(dataset.dataset, create=True)

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 349, in update_from_file

    self.create(obj, **kwargs)

  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 298, in create

    open(path, 'w').close()  # Should be rb?

IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat'

Thanks

Ravi