Yes, I am actually looking for the actual command lines that were executed. I would like to know exactly how these tools are called so I can mimic that process from outside Galaxy env. I guess I have to dig into the database, but can you tell me what table(s) should I be looking at to find out that info?
From: Dannon Baker [mailto:dannon.baker@gmail.com]
Sent: Tuesday, April 30, 2013 2:11 PM
To: Hakeem Almabrazi
Cc: galaxy-dev@lists.bx.psu.edu List
Subject: Re: [galaxy-dev] print out workflow execution commands!
Hi Hak,
Yes, you can get all of the information saved for a particular workflow - in the abstract, not a particular workflow execution - by going to 'Download or Export' in the workflow menu, then click "Download to File". This will give you a .ga file which contains the steps in JSON format, which is fairly human readable.
If you're asking for the actual command lines executed, you'll have to dig in the database a little bit to find the exact jobs you've executed and grab the command line from there, as this information isn't tied to the workflow itself -- at least, not directly.
-Dannon
On Tue, Apr 30, 2013 at 3:05 PM, Hakeem Almabrazi <halmabrazi@idtdna.com> wrote:
Hi everyone,
Is there an easy way to view/save/print out the executed commands and their parameters for a workflow? I want to see what is going on for certain steps in my workflow.
Regards,
Hak
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