Hi, I always see this error pop up in the logs when one of the steps failed... It seems to have a problem deleting the working directory since it claims they are not empty. Ofcourse when I check, the directory is empty, but I am left with a gazilion empty working directories, alhtough no problems with the installation otherwise... Using the latest pull Any ideas? Thanks, Thon galaxy.datatypes.metadata DEBUG 2012-11-08 15:43:29,532 Cleaning up external metadata files galaxy.objectstore CRITICAL 2012-11-08 15:43:29,621 /mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/105 delet e error [Errno 39] Directory not empty: '/mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/105' ls -la /mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/105 total 36K drwxrwsr-x 2 svcgalaxy 0 Nov 8 15:42 . drwxrwsr-x 30 svcgalaxy 565 Nov 8 15:42 .. (galaxy_env)[svcgalaxy@srv151 g]$