Hi Tiago, for simple tool_dependencies you can use the new planemo depbash command from Peter: https://github.com/galaxyproject/planemo/pull/310 For more complicated once I recommend to use the TTS for the time being. You can create the initial repository install from it and change your tool_dependency file on your harddrive (after installation) and simply reinstall the tool after every change. What kind of dependencies do you have? Python/Perl? Consider contributing to tools-iuc (https://github.com/galaxyproject/tools-iuc). We can probably help you and guide you your way. Thanks for working on RAD-seq! Bjoern On 20.10.2015 11:01, Tiago Rodrigues Antao wrote:
Hi,
I am afraid that I might be overlooking something obvious but...
I am trying to add a few tools to the RAD-Seq portfolio of Galaxy. For that effect I am designing a few package wrappers. My problem is to understand the best practice to develop wrappers for dependencies of external tools.
For normal tools, that is quite easy: one uses the galaxy/tool/XXX to do all development and testing.
But for dependency wrappers, the only solution that I have found is to upload the wrapper to a toolshed and installing it via the admin interface... This is cumbersome. Is there any way to test/develop a package wrapper so that I can test tool_dependencies.xml without uploading it to a toolshed and installing it from there?
Thanks, Tiago ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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