Hi Etienne, Sorry, I didn't notice that the job was run on the test server. The root of the problem could be that the job output exceeds quota. Running the job there will not get around quota, even if the tool has other issues on test that are triggering the failure (is possible - we do test on that server). If the tool did run, and the output hits your account, if it is over quota (10 GB) no more jobs will be permitted to run. It might be best to consider using a local or cloud Galaxy. I do not know when the Fetch Taxonomy tool will be restored to Main (or if yet). Thanks, Jen -- Jennifer Hillman-Jackson Galaxy Application Support http://usegalaxy.org http://galaxyproject.org http://biostar.usegalaxy.org On Thu, Mar 31, 2016 at 9:08 PM, etienne waleckx <etiennewalex@yahoo.fr> wrote:
Gracias Jenifer,
I re-ran the tool but the same happens. It is strange as when running the same tool with the same file in usegalaxy it is working well but I can't in testgalaxy. I want to run it in testgalaxy so I can use the fetch taxonomic representation tool after. I already have the Megablast file but I can't upload it directly to testgalazxy as it semms too big, so I would like to run the megablast in testgalaxy, then fetch taxonomic representtion.
Thanks for your help!
Etienne
------------------------------ *De :* Jennifer Hillman-Jackson <jen@galaxyproject.org> *À :* "galaxy-bugs@bx.psu.edu" <galaxy-bugs@bx.psu.edu> *Cc :* etiennewalex@yahoo.fr *Envoyé le :* Jeudi 31 mars 2016 18h03 *Objet :* Re: [galaxy-bugs] Galaxy tool error report from etiennewalex@yahoo.fr (megablast_wrapper)
Hello,
Please re-run the tool as this was most likely a transient cluster failure.
Our apologies for any confusion,
Jen
-- Jennifer Hillman-Jackson Galaxy Application Support http://usegalaxy.org http://galaxyproject.org http://biostar.usegalaxy.org
On Wed, Mar 30, 2016 at 11:09 PM, <galaxy-bugs@bx.psu.edu> wrote:
GALAXY TOOL ERROR REPORT ------------------------
This error report was sent from the Galaxy instance hosted on the server "https://test.galaxyproject.org/"
----------------------------------------------------------------------------- This is in reference to dataset id 763833 (c5a49985053f8bd3) from history id 328501 (aa1b4cb871c5e196)
----------------------------------------------------------------------------- You should be able to view the history containing the related history item (83ca2a7d5534e19e)
2: Megablast on data 1
by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link.
https://test.galaxyproject.org/history?id=aa1b4cb871c5e196
----------------------------------------------------------------------------- The user 'etiennewalex@yahoo.fr' provided the following information:
Hi,
Can you help me? I don't find why the tool is not running with this dataset,
Thanks!
Etienne
----------------------------------------------------------------------------- info url: https://test.galaxyproject.org/datasets/83ca2a7d5534e19e/show_params job id: 529174 (5c8c4452f3c278b5) tool id: toolshed.g2.bx.psu.edu/repos/devteam/megablast_wrapper/megablast_wrapper/1.2.0 tool version: 1.2.0 job pid or drm id: 529174 job tool version: None
----------------------------------------------------------------------------- job command line: None
----------------------------------------------------------------------------- job stderr:
----------------------------------------------------------------------------- job stdout:
----------------------------------------------------------------------------- job info: Remote job server indicated a problem running or monitoring this job.
----------------------------------------------------------------------------- job traceback: None
----------------------------------------------------------------------------- (This is an automated message).