Iry Witham wrote:
> I have performed a new install of Galaxy for development and deployment purposes. However, when I run the run.sh script I get the following error:
>
> Traceback (most recent call last):
> File "./scripts/paster.py", line 34, in <module>
> command.run()
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 84, in run
> invoke(command, command_name, options, args[1:])
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 123, in invoke
> exit_code = runner.run(args)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 218, in run
> result = self.command()
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 274, in command
> relative_to=base, global_conf=vars)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 308, in loadserver
> relative_to=relative_to, **kw)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 210, in loadserver
> return loadobj(SERVER, uri, name=name, **kw)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 224, in loadobj
> global_conf=global_conf)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 248, in loadcontext
> global_conf=global_conf)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 278, in _loadconfig
> return loader.get_context(object_type, name, global_conf)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 363, in get_context
> object_type, name=name)
> File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 528, in find_config_section
> self.filename))
> LookupError: No section 'main' (prefixed by 'server') found in config /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/universe_wsgi.ini
>
> I have modified the universe_wsgi.ini to reflect the way our production server is configured. The following is the server section of that file:
>
> #
> # Galaxy is configured by default to be useable in a single-user development
> # environment. To tune the application for a multi-user production
> # environment, see the documentation at:
> #
> #
http://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer
> #
>
> # Throughout this sample configuration file, except where stated otherwise,
> # uncommented values override the default if left unset, whereas commented
> # values are set to the default value.
> # examples of many of these options are explained in more detail in the wiki:
> #
> # Config hackers are encouraged to check there before asking for help.
>
> # ---- HTTP Server ----------------------------------------------------------
>
> # Configuration of the internal HTTP server.
>
> [server:web0]
> use = egg:Paste#http
> port = 8080
> host = 0.0.0.0
> use_threadpool = true
> threadpool_workers = 7
>
> # Configuration of web server 2
> [server:web1]
> use = egg:Paste#http
> port = 8081
> host = 0.0.0.0
> use_threadpool = true
> threadpool_workers = 7
>
> # Configuration of web server 3
> [server:web2]
> use = egg:Paste#http
> port = 8082
> host = 0.0.0.0
> use_threadpool = true
> threadpool_workers = 7
>
> # The internal HTTP server to use. Currently only Paste is provided. This
> # option is required.
> #use = egg:Paste#http
>
> # The port on which to listen.
> #port = 8080
>
> # The address on which to listen. By default, only listen to localhost (Galaxy
> # will not be accessible over the network). Use '0.0.0.0' to listen on all
> # available network interfaces.
> #host = 0.0.0.0
>
> # Use a threadpool for the web server instead of creating a thread for each
> # request.
> #use_threadpool = True
>
> # Number of threads in the web server thread pool.
> #threadpool_workers = 5
>
> # ---- Filters --------------------------------------------------------------
>
> # Filters sit between Galaxy and the HTTP server.
>
> # These filters are disabled by default. They can be enabled with
> # 'filter-with' in the [app:main] section below.
>
> # Define the gzip filter.
> [filter:gzip]
> use = egg:Paste#gzip
>
> # Define the proxy-prefix filter.
> [filter:proxy-prefix]
> use = egg:PasteDeploy#prefix
> prefix = /galaxy
>
> My production server works fine, but this one will not run. What am I missing?
>
> Thanks,
> Iry