Hi, which operating system are you using? We ship precompiled binaries for x64-linux systems. So I wonder why your Galaxy is trying to compile R. Can you provide us with the INSTALLATION.log from the R package? Thanks, Bjoern Am 03.12.2015 um 00:49 schrieb Hans Rudolph:
Hi Björn,
thanks very much for your efforts. Unfortunately, installation of the new deseq2-1-8-2 (uic, 2015-12-02) still fails for me -
apparently due to the included package_r_3_2_1 which fails with "configure: error: C compiler cannot create executables” and the R error status stops deseq2 installation with error "/bin/sh: line 7: Rscript: command not found”.
But all the other dependencies in the deseq2-1-8-2 package:
atlas-3-10 cairo-1-12-14 fontconfig-2-11-1 freetype-2-5-2 libpng-1-6-7 libxml2-2-9-1 ncurses-6-0 pixman-0.32-4 pixman-0-32-6 readline-6-3
show the green label “installed” as installation status.
Best regards, Hans