I've noticed these wrappers for BLAST+. I actually was talking about the megablast tool under NGS Mapping section... 

Thanks,
Luobin

On Fri, Mar 23, 2012 at 10:27 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Fri, Mar 23, 2012 at 4:22 PM, Luobin Yang <yangluob@isu.edu> wrote:
> Hi, all,
>
> Since megablast has been replaced by blastn in newer NCBI BLAST tools, I am
> wondering if there is an update on megablast web interface and wrapper in
> Galaxy?

Yes, there are wrappers for the main tools from NCBI BLAST+ including
blastn. They are included in the main Galaxy repository (but not available
on the public Galaxy server due to the expected computational load).

Peter