I have acquired an Internal server error on our local galaxy install. It seems to be an unterminated string. How do I resolve this?
Here is the relevant portion of the log (I hope).
Error - <type 'exceptions.ValueError'>: Unterminated string starting at: line 1 column 65528 (char 65528)
File '/projects/galaxy/bin/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
app_iter = self.application(environ, sr_checker)
File '/projects/galaxy/bin/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py', line 84 in __call__
return self.application(environ, start_response)
File '/projects/galaxy/bin/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py', line 633 in __call__
return self.application(environ, start_response)
File '/projects/galaxy/bin/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
return self.handle_request( environ, start_response )
File '/projects/galaxy/bin/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request
body = method( trans, **kwargs )
File '/projects/galaxy/bin/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 383 in decorator
return func( self, trans, *args, **kwargs )
File '/projects/galaxy/bin/galaxy-dist/lib/galaxy/web/base/controllers/admin.py', line 34 in index
installing_repository_ids = suc.get_ids_of_tool_shed_repositories_being_installed( trans.app, as_string=True )
File '/projects/galaxy/bin/galaxy-dist/lib/tool_shed/util/shed_util_common.py', line 277 in get_ids_of_tool_shed_repositories_being_installed
app.install_model.ToolShedRepository.status == loading_datatypes_status ) ):
File '/projects/galaxy/bin/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/orm/query.py', line 2348 in instances
File '/projects/galaxy/bin/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/orm/mapper.py', line 2120 in _instance
File '/projects/galaxy/bin/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/orm/mapper.py', line 1974 in populate_state
File '/projects/galaxy/bin/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/orm/strategies.py', line 150 in fetch_col
File '/projects/galaxy/bin/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/types.py', line 658 in process
File '/projects/galaxy/bin/galaxy-dist/lib/galaxy/model/custom_types.py', line 52 in process_result_value
return json_decoder.decode( str( _sniffnfix_pg9_hex(value) ) )
File '/usr/lib64/python2.6/json/decoder.py', line 319 in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File '/usr/lib64/python2.6/json/decoder.py', line 336 in raw_decode
obj, end = self._scanner.iterscan(s, **kw).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 183 in JSONObject
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 217 in JSONArray
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 183 in JSONObject
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 217 in JSONArray
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 183 in JSONObject
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 217 in JSONArray
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 217 in JSONArray
value, end = iterscan(s, idx=end, context=context).next()
File '/usr/lib64/python2.6/json/scanner.py', line 55 in iterscan
rval, next_pos = action(m, context)
File '/usr/lib64/python2.6/json/decoder.py', line 155 in JSONString
return scanstring(match.string, match.end(), encoding, strict)
ValueError: Unterminated string starting at: line 1 column 65528 (char 65528)