I'm still having major issues with repo updates. 1) I'm getting this message for installing dependencies for package_samtools_1_1 that it says are missing: Error installing tool dependency ncurses version 5.9: Unable to locate required tool shed repository named package_ncurses_5_9 owned by iuc with revision c0735727b530. Error installing tool dependency zlib version 1.2.8: Unable to locate required tool shed repository named package_zlib_1_2_8 owned by iuc with revision 03abe628fbe8.Installed tool dependencies: ncurses,zlib But I have these packages installed, which are the latest revisions. package_ncurses_5_9 iuc 5e1760c773ba package_zlib_1_2_8 iuc 63a4a902cda2 2) bam_to_sam has a red arrow icon indicating a newer installable revision is available, but when I check for updates it says: The installed repository named 'bam_to_sam' is current, there are no updates available. There are no newer entries for this on the Installed tool shed repositories page, just the one saying there is a newer revision. 3) Still getting: Found The resource was found at http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=https://galaxy.hpc.qmul.ac.uk/&name=bam_to_sam&owner=devteam&changeset_revision=c09a20532957; you should be redirected automatically. For any repository when I click on "Get repository updates". I am not redirected automatically, clicking the link doesn't work, only pasting it into the browser bar. Help would be greatly appreciated, as I'm thinking something major has gone wrong and that I will have to reinstall galaxy. Many thanks Anna On 6 March 2015 at 16:50, Anna Terry <iseeglass@googlemail.com> wrote:
Hi, I have a few installed tool shed repositories which are showing that updates are available. When I click get repository updates, instead of the usual upate page, I get a page that simply says Found
The resource was found at http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=https://galaxy.hpc.qmul.ac.uk/&name=bam_to_sam&owner=devteam&changeset_revision=250151b4d934; you should be redirected automatically.
This is for bam_to_sam, but same problem for blast_datatypes, pileup_interval and sam_to_bam too.
Anyone have any ideas why I'm seeing this?
Cheers
Anna