Hello Thon,

Thanks for reporting this.  This issue was corrected 2 weeks ago, but unfortunately just missed the cutoff for the last Galaxy release.  It will be available in the next release currently planned for next week.

Greg Von Kuster


On Jan 3, 2013, at 6:18 PM, Anthonius deBoer wrote:


Hi,

I installed PICARD from the main tool shed in the latest update from galaxy-dist and when I clicked on the picard installed dependency link in the admin tool, I got this...



Error Traceback:

View as:   Interactive  |  Text  |  XML (full)
 TypeError: 'NoneType' object is not iterable
URL: http://srv151/admin_toolshed/browse_tool_dependency?repository_id=a799d38679e985db&id=f597429621d6eb2b
Module weberror.evalexception.middleware:364 in respond          view
>>  app_iter = self.application(environ, detect_start_response)
Module paste.debug.prints:98 in __call__          view
>>  environ, self.app)
Module paste.wsgilib:539 in intercept_output          view
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__          view
>>  return self.application(environ, start_response)
Module galaxy.web.framework.middleware.remoteuser:91 in __call__          view
>>  return self.app( environ, start_response )
Module paste.httpexceptions:632 in __call__          view
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__          view
>>  body = method( trans, **kwargs )
Module galaxy.web.framework:206 in decorator          view
>>  return func( self, trans, *args, **kwargs )
Module galaxy.webapps.galaxy.controllers.admin_toolshed:422 in browse_tool_dependency          view
>>  tool_dependency.error_message = suc.to_safe_string( tool_dependency.error_message )
Module galaxy.util.shed_util_common:2138 in to_safe_string          view
>>  for c in text:
TypeError: 'NoneType' object is not iterable



Extra Features
>>Display the lines of code near each part of the traceback
Show a debug prompt to allow you to directly debug the code at the traceback

I also found I always have to restart GALAXY after I install something from the toolshed otherwise I get this:

Tool 'toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.1.0' does not exist, kwd={}

I have to restart galaxy (updating the metadata in the admin does not fix this..)

Any ideas?

Thon
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