On Thu, Dec 4, 2014 at 11:53 AM, David Matthews <padam@bristol.ac.uk> wrote:
HI,
We have had a copy of Galaxy working on a login node on our cluster here for a few weeks. We have tried to get it to work with the queue but could not and so reverted back to the login node for now. However, when we try to upload data (via URL or from the desktop) we now get this error:
Traceback (most recent call last): File "/isys/galaxy/galaxy-dist/tools/data_source/upload.py", line 10, in <module> import galaxy.model File "/isys/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 27, in <module> import galaxy.datatypes.registry File "/isys/galaxy/galaxy-dist/lib/galaxy/datatypes/registry.py", line 10, in <module> import data File "/isys/galaxy/galaxy-dist/lib/galaxy/datatypes/data.py", line 2, in <module> import metadata File "/isys/galaxy/galaxy-dist/lib/galaxy/datatypes/metadata.py", line 22, in <module> from galaxy.util import listify File "/isys/galaxy/galaxy-dist/lib/galaxy/util/__init__.py", line 38, in <module> eggs.require( 'docutils' ) File "/isys/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 411, in require return c[req.project_name].require() File "/isys/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 239, in require dists = self.resolve() File "/isys/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 192, in resolve if e.args[1].key != e.args[0].key: IndexError: tuple index out of range
Hi David, I believe this is a dependency conflict. The best option would be to create a Python virtualenv and start Galaxy from that: https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer#Use... --nate
We have not seen this before and are stuck. Any suggestions welcome!
Best Wishes, David.
_________________________________ Dr David A. Matthews
Senior Lecturer in Virology Room E49 Department of Cellular and Molecular Medicine, School of Medical Sciences University Walk, University of Bristol Bristol. BS8 1TD U.K.
Tel. +44 117 3312058 Fax. +44 117 3312091
D.A.Matthews@bristol.ac.uk
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