18 Jul
2012
18 Jul
'12
3:17 p.m.
Hi, I am running into some out-of-disk space errors with some of my jobs and this was because the /tmp space is running out of space. I want to use a different temporary directory but I can't get GALAXY to pick up my settings... I use this in the .ini file # Temporary files are stored in this directory. new_file_path = /mnt/ngs/analysis/tdeboer/galaxy-data/database2/tmp I set my TMPDIR environment variable to something similar, but when I check what my python script is using as its temp dir I get this: print "Temp dir: %s" % tempfile.gettempdir() Temp dir: /tmp/3642962.1.all.q It seems that the SGE engine overrides the settings in GALAXY, no? So where do I set the tmp directory to be something different then /tmp? Thanks Thon